copick new voxelspacing
core
Create an empty voxelspacing with the given name.
Usage
Description
Adds an empty voxel spacing (in Angstrom) to an existing run, providing a
container for tomograms and segmentations at that resolution. Use --run to
select the target run; --create makes the run if it does not yet exist, and
--overwrite replaces an existing voxel spacing of the same value.
Arguments
| Argument | Description |
|---|---|
VOXEL_SPACING |
The voxel spacing in Angstrom to be added to the run. |
Options
| Option | Type | Default | Description |
|---|---|---|---|
-c, --config |
path | — | Path to the configuration file. |
--run |
text | required | Name of the run to add voxel spacing to. |
--overwrite / --no-overwrite |
boolean flag | False |
Overwrite the object if it exists. |
--create / --no-create |
boolean flag | True |
Create the object if it does not exist. |
--debug / --no-debug |
boolean flag | False |
Enable debug logging. |
Examples
# Add a 10.0 Angstrom voxel spacing to a run
copick new voxelspacing --config config.json --run TS_001 10.0
# Add a voxel spacing, overwriting any existing one
copick new voxelspacing --config config.json --run TS_001 --overwrite 5.0
See also
copick new run— create the run that holds the voxel spacingcopick add tomogram— import a tomogram at this voxel spacing