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copick new picks

core

Create empty picks for a given particle name.

Usage

copick new picks [OPTIONS]

Description

Creates an empty pick set for the named particle in every run of the project, seeding an annotation session that can be populated later. Picks are written to the given output user and session (defaulting to copick and 0). Runs that already have matching picks are skipped unless --overwrite is passed.

Options

Option Type Default Description
-c, --config path — Path to the configuration file.
--particle-name text required Name of the particle to create picks for
--out-user text copick User ID to write picks to
--out-session text 0 Session ID to write picks to
--overwrite / --no-overwrite boolean flag False Overwrite existing picks
--debug / --no-debug boolean flag False Enable debug logging.

Examples

# Create empty picks for ribosomes
copick new picks --config config.json --particle-name ribosome

# Create picks with a custom output user and session
copick new picks --config config.json --particle-name proteasome \
    --out-user alice --out-session 1

# Overwrite existing picks for the particle
copick new picks --config config.json --particle-name ribosome --overwrite

See also