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copick browse

core

Browse Copick projects.

Usage

copick browse [OPTIONS]

Description

Launches an interactive terminal user interface (TUI) for exploring a copick project: runs, voxel spacings, tomograms, segmentations, picks, and meshes.

Provide either a local configuration file with --config or one or more CryoET Data Portal dataset IDs with --dataset-ids; the two are mutually exclusive. If neither is given, the COPICK_CONFIG environment variable is used when set.

Options

Option Type Default Description
-c, --config path — Path to the configuration file.
-ds, --dataset-ids integer · multiple — Dataset IDs to include (multiple inputs possible).
--debug / --no-debug boolean flag False Enable debug logging.

Examples

# Browse a local project from a config file
copick browse --config config.json

# Browse CryoET Data Portal datasets by ID
copick browse --dataset-ids 10000 --dataset-ids 10001

# Browse using the COPICK_CONFIG environment variable
copick browse

See also