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copick export

Export copick data to external formats.

Usage

copick export [OPTIONS] COMMAND [ARGS]...

Commands

Command Description
alignment Export alignments to AreTomo3, Warp, RELION, IMOD or the CryoET Data Portal format.
cets Export a project's tilt series, alignments and tomograms as a CETS dataset.
ctf Export the CTF fits of tilt series.
picks Export picks to external formats (EM, STAR, Dynamo, CSV).
segmentation Export segmentations to MRC, TIFF, Zarr, or EM.
tiltseries Export tilt series as MRC, TIFF or Zarr stacks.
tomogram Export tomograms to external formats (MRC, TIFF, Zarr).