fit a plane to a set of copick points.

fit a mesh describing the sample from two sets of points defining upper and lower boundary.

Create a mesh defining the valid reconstructed area.

Compute the intersection of two meshes.

Convert a watertight mesh to a dense voxel segmentation.

Sample random points in/on/outside a mesh.

fit a mesh describing the sample from a binary segmentation.

Create a copick project. Optionally import tomograms.

Import segmentations into a copick project.

Create empty picks inside a copick project.

Run the napari-copick

This solution downloads PDBs and uses Polnet to convert into MRCs, and simulation-compatible textfile.

Creates a multilabel segmentation by combining individual segmentations for all pickable objects, including particles, in a Copick project. Can process a single run or all runs in the project.

Optimization of UNet using Optuna with Copick data.

Extract multiscale features from a tomogram using DINOv2 (ViT) and save them using Copick's API.

Generate a Copick Project Composed with polnet simulations.