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copick / mesh_to_seg / 0.8.0

Convert Mesh to Segmentation

Convert a watertight mesh to a dense voxel segmentation.
Tags
copickplanefittingsurface
Solution written by
Utz H. Ermel
License of solution
MIT
Source Code
View on GitHub

Arguments

--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--run_names
Comma-separated list of run names. (default value: )
--voxel_spacing
Voxel spacing. (default value: PARAMETER_VALUE)
--tomo_type
Type of tomogram. (default value: PARAMETER_VALUE)
--input_object
Name of the input object. (default value: PARAMETER_VALUE)
--input_user
Name of the input user. (default value: PARAMETER_VALUE)
--input_session
ID of the input session. (default value: PARAMETER_VALUE)
--output_object
Name of the output object. (default value: PARAMETER_VALUE)
--output_user
Name of the output user. (default value: from-mesh)
--output_session
Name of the output session. (default value: 0)

Usage instructions

Please follow this link for details on how to install and run this solution.