Import segmentations.

Import segmentations into a copick project.

Arguments

--copick_config_path

Path to the Copick project root. Write access is expected for both overlay and static root. (default value: PARAMETER_VALUE)

--mask_dir

Path to the directory containing the tomograms. (default value: PARAMETER_VALUE)

--voxel_size

Voxel size of the tomograms. (default value: PARAMETER_VALUE)

--name_format

Format string for the mask names. Use {run_name} as placeholder for the run name. (default value: PARAMETER_VALUE)

--as_int8

Whether to write the segmentation as int8. (default value: 1)

--out_object

Name of the output pickable object. (default value: random-points)

--out_user

User/Tool name for output points. (default value: solution-01)

--out_session

Output session, indicating this set was generated by a tool. (default value: 0)

Please follow this link for details on how to install and run this solution.