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copick / generate-dino-features / 0.0.1

Generate DINOv2 Features from a Copick Run

Extract multiscale features from a tomogram using DINOv2 (ViT) and save them using Copick's API.
Tags
copickplanefittingsurface
Solution written by
Kyle Harrington
License of solution
MIT
Source Code
View on GitHub

Arguments

--copick_config_path
Path to the Copick configuration JSON file. (default value: PARAMETER_VALUE)
--run_name
Name of the Copick run to process. (default value: PARAMETER_VALUE)
--voxel_spacing
Voxel spacing to be used. (default value: PARAMETER_VALUE)
--tomo_type
Type of tomogram to process. (default value: PARAMETER_VALUE)
--feature_type
Name for the feature type to be saved. (default value: PARAMETER_VALUE)

Usage instructions

Please follow this link for details on how to install and run this solution.